BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB016F05SP1|AL427042
(857 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig488 1659 0.0
>3x_Contig488
Length = 1926
Score = 1659 bits (831), Expect = 0.0
Identities = 840/849 (98%)
Strand = Plus / Minus
Query: 9 aagacttatttcctaccctgattgagctctacatcccgctataccattaaacatagatag 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1926 aagacttatttcctaccctgattgagctctacatcccgctataccattaaacatagatag 1867
Query: 69 ctttcagcgtttcaaaactgcttttttccactttcctaattagacctaagawaatcaagc 128
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1866 ctttcagcgtttcaaaactgcttttttccactttcctaattagacctaagataatcaagc 1807
Query: 129 tactamataccgaacttcttctttgttgtcttaatacctttttttcttttggaaaaaatt 188
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1806 tactacataccgaacttcttctttgttgtcttaatacctttttttcttttggaaaaaatt 1747
Query: 189 ataggaaaaaaaaaattgaaaararaagtactgtaagtattcctcaattgccttcgttac 248
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 1746 ataggaaaaaaaaaattgaaaagagaagtactgtaagtattcctcaattgccttcgttac 1687
Query: 249 tcataaggtttaagaattaacggctggtatamaggaataactcggtatccatattacttg 308
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1686 tcataaggtttaagaattaacggctggtatacaggaataactcggtatccatattacttg 1627
Query: 309 tgttgtaccatttgacgctattttctgaaagaatctgctacgaatacttctccttcccaa 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1626 tgttgtaccatttgacgctattttctgaaagaatctgctacgaatacttctccttcccaa 1567
Query: 369 ctttactcactgtacttgtatttgatttgatgtgtactgaaatttwamagagacattact 428
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1566 ctttactcactgtacttgtatttgatttgatgtgtactgaaattttacagagacattact 1507
Query: 429 tactaggtttaaaaatttcaacagaacttttaaaggtcaaattttgagagataaaaaaaa 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1506 tactaggtttaaaaatttcaacagaacttttaaaggtcaaattttgagagataaaaaaaa 1447
Query: 489 gatactatatatcagtgtttttgactagtatttgaggagattgatagagaaactgctgtc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1446 gatactatatatcagtgtttttgactagtatttgaggagattgatagagaaactgctgtc 1387
Query: 549 tctggcttattctgttcacgttctcagtatccaacccccaattataaggctgaatatctt 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1386 tctggcttattctgttcacgttctcagtatccaacccccaattataaggctgaatatctt 1327
Query: 609 cctttttttctttctcttctctttctggtaggattttkagtcagacaacggcttaatcaa 668
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1326 cctttttttctttctcttctctttctggtaggatttttagtcagacaacggcttaatcaa 1267
Query: 669 ctttaaggaaagaaaaagaaaacacacatattggagtgacctaatctaattcatttgtct 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1266 ctttaaggaaagaaaaagaaaacacacatattggagtgacctaatctaattcatttgtct 1207
Query: 729 taatattcacactccctaattgtcattttcattgtccctttgctggcttcttactgctga 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206 taatattcacactccctaattgtcattttcattgtccctttgctggcttcttactgctga 1147
Query: 789 cttttgaagctttttttgtggttattattcactgaagamagcacagacacattctgtatc 848
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1146 cttttgaagctttttttgtggttattattcactgaagacagcacagacacattctgtatc 1087
Query: 849 gcattcaaa 857
|||||||||
Sbjct: 1086 gcattcaaa 1078
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,527
Number of Sequences: 1807
Number of extensions: 10527
Number of successful extensions: 129
Number of sequences better than 1.0e-20: 1
length of query: 857
length of database: 10,358,551
effective HSP length: 16
effective length of query: 841
effective length of database: 10,329,639
effective search space: 8687226399
effective search space used: 8687226399
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.3 bits)